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Metadata for CryoMaestro integrations. Public binary downloads are temporarily paused while every archive undergoes license, provenance, security, and required- notice review. Existing metadata remains visible for auditability.

Distribution review in progress. Do not obtain third-party scientific software from an old CryoMaestro archive URL. Acquire upstream dependencies from their official publishers under their applicable licenses. See Third-party notices.

9 plugins published ctf · 1 fft · 2 motioncor · 1 particle_extraction · 1 particle_picking · 1 square_detection · 1 topaz_particle_picking · 1 two_d_classification · 1

CAN Classifier — 2D classification

v0.1.0

can-classifier

two_d_classification maintained integration

Convolutional auto-encoder-based 2D classification of particle stacks. Reads .mrcs + .star produced by the stack-maker plugin; emits class averages + per-particle assignments + FRC curves.

author: CryoMaestro Team
license: MIT
size: 39.2 KB

Distribution paused JSON

CryoMaestro Sample Extension

v0.1.0

cryomaestro-sample-extension

fft maintained integration

Reference metadata fixture for the extension review and catalog workflow. It is not intended for scientific use and is not distributed as a binary.

author: CryoMaestro Team
license: MIT
size: 4.1 KB

Distribution paused JSON

CTFFIND4 — CTF estimation

v0.1.0

ctf

ctf maintained integration

CTF estimation via CTFFIND4. Consumes micrographs from the bus, shells out to the CTFFIND4 binary inside the container, writes the star file under the data plane.

author: CryoMaestro integration; CTFFIND copyright remains with its upstream authors
license: Janelia Research Campus Software License; notice review pending
size: 21566.6 KB

Distribution paused JSON

FFT — magnitude spectrum

v1.1.0

fft

fft maintained integration

Computes the magnitude spectrum FFT of an input MRC image and writes the result as a reviewable image. Reference integration metadata only; no binary is currently distributed through the public catalog.

author: CryoMaestro Team
license: MIT
size: 313.5 KB

Distribution paused JSON

MotionCor2 — beam-induced motion correction

v0.1.0

motioncor

motioncor maintained integration

MotionCor2-based beam-induced motion correction for cryo-EM movies. Pins ~11 GB host RAM; production deployments need at least a g4dn.2xlarge per the operator sizing notes.

author: CryoMaestro integration; MotionCor copyright remains with its upstream authors
license: UCSF license required; redistribution review pending
size: 11630.0 KB

Distribution paused JSON

Ptolemy — square + hole detection

v0.1.0

ptolemy

square_detection maintained integration

Ptolemy ONNX models for low-mag square detection + med-mag hole detection. One plugin process serves both categories via separate consumer registrations; manifest declares the square-detection surface as the public face.

author: CryoMaestro integration; Ptolemy copyright remains with its upstream authors
license: CC-BY-NC-4.0 upstream; commercial-use review pending
size: 5659.2 KB

Distribution paused JSON

Stack Maker — particle extraction

v0.1.0

stack-maker

particle_extraction maintained integration

Extracts boxed particles from a micrograph given picker coordinates; emits RELION-style .mrcs + .star + companion .json. Pure-numpy compute; no external binaries.

author: CryoMaestro Team
license: MIT
size: 20.4 KB

Distribution paused JSON

Template Picker — particle picking

v0.1.0

template-picker

particle_picking maintained integration

FFT-correlation template-matching particle picker. External broker version of the in-process pp/template_picker; deploy this when picker scaling is needed across multiple workers. Two backends now serve PARTICLE_PICKING — operators pick which one to dispatch to.

author: CryoMaestro Team
license: MIT
size: 167.0 KB

Distribution paused JSON

Topaz — particle picking + denoise

v0.1.0

topaz

topaz_particle_picking maintained integration

Topaz CNN-based particle picking (and the companion micrograph denoiser). Two categories share one plugin process — backend_id reflects the picking surface; the denoise category is served by the same image via a second consumer registration.

author: CryoMaestro integration; Topaz copyright remains with its upstream authors
license: GPL-3.0 upstream; redistribution review pending
size: 15331.4 KB

Distribution paused JSON

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